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Laboratory of Systems Biology

  • Members
    • Marko Vendelin
    • Rikke Birkedal
    • Martin Laasmaa
  • News
  • Publications
  • Theses
  • Services
    • Bioenergetics
    • Electrophysiology
    • Microscopy
    • Modelling
  • Software
    • IOCBIO Gel
    • IOCBIO Kinetics
    • IOCBIO Sparks
    • IOCBIO WebDB
  • Positions

Theses

A list of theses completed in the laboratory by our students is available here: List of Theses

PhD theses defended in the laboratory.

2026

  • Hamed Karimi, PhD, Development of Computational and Statistical Methods for Fluorescence-Based Diffusion Measurements, May 2026

2025

  • Romain Bernasconi, PhD, Unravelling the Mechanisms of Energetics-Induced Fast-to-Slow Phenotypic Shift in Creatine-Deficient Mice, December 2025

2022

  • Jelena Branovets, PhD, Energetics and Calcium Handling in Hearts from Creatine-Deficient Mice, September 2022

2017

  • Natalja Jepihhina, PhD, Heterogeneity of Diffusion Restrictions in Cardiomyocytes, September 2017

2016

  • Martin Laasmaa, PhD, Revealing Aspects of Cardiac Function from Fluorescence and Electrophysiological Recordings, December 2016

2015

  • Mari Kalda, PhD, Mechanoenergetics of a Single Cardiomyocyte, December 2015
  • Niina Karro, PhD, Analysis of ADP Compartmentation in Cardiomyocytes and Its Role in Protection Against Mitochondrial Permeability Transition Pore Opening, October 2015

2013

  • Mervi Sepp, PhD, Estimation of Diffusion Restrictions in Cardiomyocytes Using Kinetic Measurements, August 2013

2012

  • Ardo Illaste, PhD, Analysis of Molecular Movements in Cardiac Myocytes, February 2012
  • David W. Schryer, PhD, Metabolic Flux Analysis of Compartmentalized Systems using Dynamic Isotopologue Modeling, April 2012

Laboratory of Systems Biology

Department of Cybernetics, School of Science, Tallinn University of Technology

Head: Marko Vendelin

Akadeemia 15
12618 Tallinn
Estonia

Phone: +372 5816 3859

https://sysbio.ioc.ee

Twenty Twenty-Five

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